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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term SYT2:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000143858	SYT2	0	0	2	ENSG00000143858	ENST00000367267	ENSP00000356236	synaptotagmin II [Source:HGNC Symbol;Acc:11510]	1	202559724	202679545	-1	q32.1	202559724	202612581	SYT2	SYT2-002	HGNC Symbol	HGNC transcript name	2	50.15	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	127833	11510	SYT2	NM_001136504	27511

MSeqDR Master Exome Data Set M1: 213 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	202559747	T	-A	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs202131300	-	-	lod=327:588	-	-	-	het	20
2	1	202559747	T	-A	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs202131300	-	-	lod=327:588	-	-	-	hom	1
3	1	202559747	T	-A	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs202131300	-	-	lod=327:588	-	-	-	het	20
4	1	202559747	T	-A	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs202131300	-	-	lod=327:588	-	-	-	hom	1
5	1	202559747	T	C	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	NA	-	-	lod=327:588	-	-	-	het	1
6	1	202559747	T	C	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	NA	-	-	lod=327:588	-	-	-	het	1
7	1	202559753	G	T	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs1046269	0.10899	-	lod=327:588	-	-	-	hom	9
8	1	202559753	G	T	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs1046269	0.10899	-	lod=327:588	-	-	-	het	114
9	1	202559753	G	T	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs1046269	0.10899	-	lod=327:588	-	-	-	hom	9
10	1	202559753	G	T	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs1046269	0.10899	-	lod=327:588	-	-	-	het	114
11	1	202559771	A	G	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs115094098	0.0231	-	lod=327:588	-	-	-	het	4
12	1	202559771	A	G	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs115094098	0.0231	-	lod=327:588	-	-	-	het	4
13	1	202560004	C	T	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs186939485	0.00189	-	-	-	-	-	het	1
14	1	202560004	C	T	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs186939485	0.00189	-	-	-	-	-	het	1
15	1	202560013	G	A	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs192131877	0.00096	-	-	-	-	-	het	1
16	1	202560013	G	A	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs192131877	0.00096	-	-	-	-	-	het	1
17	1	202560163	A	G	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
18	1	202560163	A	G	ENST00000367268	ENSG00000143858	202559724	202679545	ENSP00000356237	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
19	1	202560291	C	T	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs114627427	0.0551	-	-	-	-	-	hom	1
20	1	202560291	C	T	ENST00000367267	ENSG00000143858	202559724	202679545	ENSP00000356236	SYT2	-1	SYT2_HUMAN	-	-	3'_UTR	rs114627427	0.0551	-	-	-	-	-	het	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding SYT2 1:202559724..202679545 region Gbrowse